3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02511

Details:

PFam ID : PF02511

PFam Domain Description : Thymidylate synthase complementing protein

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 655

Average sequence length: 195.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02511	C4K6D4_HAMD5_221_359	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02511	C4NT31_9CAUD_16_170	100

Sequence based PCA Plot of the family - PF02511 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=65 Length=8
Motif2 Start=160 Length=8
Motif3 Start=43 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay