3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02504

Details:

PFam ID : PF02504

PFam Domain Description : Fatty acid synthesis protein

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 959

Average sequence length: 312.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02504	E3YHC6_LISMO_1_38	81.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02504	Q1D9B1_MYXXD_9_338	100

Sequence based PCA Plot of the family - PF02504 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=19 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay