3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02501

Details:

PFam ID : PF02501

PFam Domain Description : Type II secretion system (T2SS), protein I

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 237

Average sequence length: 80.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02501	D9PN67_9ZZZZ_50_92	81.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02501	B3PF13_CELJU_51_156	100

Sequence based PCA Plot of the family - PF02501 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay