3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02498

Details:

PFam ID : PF02498

PFam Domain Description : BRO family, N-terminal domain

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 1021

Average sequence length: 92.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02498	Q0IL72_NPVLS_13_112	78.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02498	D6U3G4_9CHLR_31_135	92.9

Sequence based PCA Plot of the family - PF02498 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay