3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02494

Details:

PFam ID : PF02494

PFam Domain Description : HYR domain

Number of Sequence in 50% Dataset : 204

Number of Sequence in Full Dataset : 431

Average sequence length: 80.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02494	B8ILX4_METNO_9_87	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02494	F2UGQ8_9EUKA_2260_2302	100

Sequence based PCA Plot of the family - PF02494 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=83 Length=11
Motif2 Start=46 Length=11
Motif3 Start=2 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay