3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02493

Details:

PFam ID : PF02493

PFam Domain Description : MORN repeat

Number of Sequence in 50% Dataset : 1435

Number of Sequence in Full Dataset : 9611

Average sequence length: 21.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02493	B8ILX4_METNO_9_87	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02493	D2VPR8_NAEGR_217_237	28

Sequence based PCA Plot of the family - PF02493 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay