3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02492

Details:

PFam ID : PF02492

PFam Domain Description : CobW/HypB/UreG, nucleotide-binding domain

Number of Sequence in 50% Dataset : 220

Number of Sequence in Full Dataset : 2782

Average sequence length: 176.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02492	B8ILX4_METNO_9_87	84.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02492	B9GQJ3_POPTR_162_231	99.8

Sequence based PCA Plot of the family - PF02492 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=17
Motif2 Start=86 Length=14
Motif3 Start=59 Length=11
Motif4 Start=1 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay