3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02489

Details:

PFam ID : PF02489

PFam Domain Description : Herpesvirus glycoprotein H

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 62

Average sequence length: 557.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02489	E2IL06_ELHV1_80_725	88.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02489	Q77YS1_9ALPH_133_836	100

Sequence based PCA Plot of the family - PF02489 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=279 Length=8
Motif3 Start=162 Length=8
Motif4 Start=194 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay