3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02488

Details:

PFam ID : PF02488

PFam Domain Description : Merozoite Antigen

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 32

Average sequence length: 223.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02488	A7T389_NEMVE_1_101	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02488	O76171_BABEQ_24_272	100

Sequence based PCA Plot of the family - PF02488 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=45 Length=8
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay