3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02485

Details:

PFam ID : PF02485

PFam Domain Description : Core-2/I-Branching enzyme

Number of Sequence in 50% Dataset : 175

Number of Sequence in Full Dataset : 673

Average sequence length: 231.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02485	Q1ZJ44_9GAMM_63_166	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02485	B8CCB0_THAPS_207_403	99.5

Sequence based PCA Plot of the family - PF02485 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=263 Length=8
Motif3 Start=27 Length=8
Motif4 Start=239 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay