3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02481

Details:

PFam ID : PF02481

PFam Domain Description : DNA recombination-mediator protein A

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 1432

Average sequence length: 203.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02481	Q1ZJ44_9GAMM_63_166	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02481	D1PF83_9BACT_72_294	100

Sequence based PCA Plot of the family - PF02481 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=173 Length=23
Motif2 Start=80 Length=11
Motif3 Start=151 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay