3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02479

Details:

PFam ID : PF02479

PFam Domain Description : Herpesvirus immediate early protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 24

Average sequence length: 113.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02479	Q8B559_9ALPH_51_120	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02479	O89264_ILTV_29_158	95.6

Sequence based PCA Plot of the family - PF02479 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay