3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02476

Details:

PFam ID : PF02476

PFam Domain Description : US2 family

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 28

Average sequence length: 129.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02476	B1A4T1_9ALPH_119_238	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02476	B1A4T1_9ALPH_119_238	100

Sequence based PCA Plot of the family - PF02476 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=1 Length=8
Motif4 Start=15 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay