3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02475

Details:

PFam ID : PF02475

PFam Domain Description : Met-10+ like-protein

Number of Sequence in 50% Dataset : 131

Number of Sequence in Full Dataset : 526

Average sequence length: 193.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02475	E4ZR97_LEPMC_494_615	78.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02475	B3L2G0_PLAKH_303_646	99.8

Sequence based PCA Plot of the family - PF02475 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=49 Length=8
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay