3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02474

Details:

PFam ID : PF02474

PFam Domain Description : Nodulation protein A (NodA)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 120

Average sequence length: 162.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02474	C7MQ01_SACVD_1_184	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02474	C7MQ01_SACVD_1_184	99.1

Sequence based PCA Plot of the family - PF02474 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=49 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay