3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02472

Details:

PFam ID : PF02472

PFam Domain Description : Biopolymer transport protein ExbD/TolR

Number of Sequence in 50% Dataset : 512

Number of Sequence in Full Dataset : 2293

Average sequence length: 131.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02472	Q4FU48_PSYA2_1_56	87.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02472	D7JG22_9BACT_6_226	100

Sequence based PCA Plot of the family - PF02472 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=103 Length=8
Motif3 Start=5 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay