3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02471

Details:

PFam ID : PF02471

PFam Domain Description : Borrelia outer surface protein E

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 28

Average sequence length: 103.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02471	B9X9H0_9SPIO_1_41	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02471	Q9S0E0_BORBU_127_229	100

Sequence based PCA Plot of the family - PF02471 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay