3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02470

Details:

PFam ID : PF02470

PFam Domain Description : mce related protein

Number of Sequence in 50% Dataset : 356

Number of Sequence in Full Dataset : 2830

Average sequence length: 84.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02470	D5P4U6_9MYCO_35_78	98.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02470	E4TVH0_MARTH_35_199	100

Sequence based PCA Plot of the family - PF02470 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay