3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02469

Details:

PFam ID : PF02469

PFam Domain Description : Fasciclin domain

Number of Sequence in 50% Dataset : 710

Number of Sequence in Full Dataset : 2065

Average sequence length: 129.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02469	B0Y944_ASPFC_54_149	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02469	D5FFX3_CRAGI_1_49	99.9

Sequence based PCA Plot of the family - PF02469 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=63 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=11
Motif4 Start=190 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay