3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02467

Details:

PFam ID : PF02467

PFam Domain Description : Transcription factor WhiB

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 503

Average sequence length: 67.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02467	D0WK58_9ACTO_1_39	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02467	A8WA56_9CAUD_16_98	100

Sequence based PCA Plot of the family - PF02467 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=1 Length=8
Motif3 Start=50 Length=11
Motif4 Start=71 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay