3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02466

Details:

PFam ID : PF02466

PFam Domain Description : Tim17/Tim22/Tim23/Pmp24 family

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 757

Average sequence length: 125.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02466	E0VAK4_PEDHC_17_179	59.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02466	C5WYI4_SORBI_1_77	98.9

Sequence based PCA Plot of the family - PF02466 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay