3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02464

Details:

PFam ID : PF02464

PFam Domain Description : Competence-damaged protein

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 1343

Average sequence length: 152.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02464	D6SUT0_9DELT_258_396	80.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02464	C0D0N0_9CLOT_1_73	100

Sequence based PCA Plot of the family - PF02464 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=23
Motif2 Start=90 Length=14
Motif3 Start=123 Length=8
Motif4 Start=18 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay