3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02462

Details:

PFam ID : PF02462

PFam Domain Description : Opacity family porin protein

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 303

Average sequence length: 137.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02462	D1E0G9_NEIGO_1_53	78.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02462	F2C3N6_HAEAE_46_217	100

Sequence based PCA Plot of the family - PF02462 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=39 Length=8
Motif3 Start=188 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay