3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02461

Details:

PFam ID : PF02461

PFam Domain Description : Ammonia monooxygenase

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 441

Average sequence length: 152.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02461	A7M9C0_9BACT_1_40	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02461	Q84EA4_9BACT_1_80	99.7

Sequence based PCA Plot of the family - PF02461 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=37 Length=8
Motif2 Start=2 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay