3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02459

Details:

PFam ID : PF02459

PFam Domain Description : Adenoviral DNA terminal protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 36

Average sequence length: 530.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02459	E7CH34_9ADEN_57_714	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02459	Q66852_ADEGX_27_591	100

Sequence based PCA Plot of the family - PF02459 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=467 Length=8
Motif2 Start=37 Length=8
Motif3 Start=492 Length=8
Motif4 Start=21 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay