3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02458

Details:

PFam ID : PF02458

PFam Domain Description : Transferase family

Number of Sequence in 50% Dataset : 668

Number of Sequence in Full Dataset : 1638

Average sequence length: 311.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02458	Q2R162_ORYSJ_206_327	87.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02458	E0CPT0_VITVI_88_143	99.7

Sequence based PCA Plot of the family - PF02458 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=170 Length=8
Motif2 Start=344 Length=8
Motif3 Start=420 Length=17
Motif4 Start=71 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay