3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02456

Details:

PFam ID : PF02456

PFam Domain Description : Adenovirus IVa2 protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 30

Average sequence length: 311.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02456	B8M5K0_TALSN_496_615	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02456	Q994E9_9ADEN_2_372	100

Sequence based PCA Plot of the family - PF02456 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=129 Length=8
Motif3 Start=186 Length=11
Motif4 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay