3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02450

Details:

PFam ID : PF02450

PFam Domain Description : Lecithin:cholesterol acyltransferase

Number of Sequence in 50% Dataset : 183

Number of Sequence in Full Dataset : 513

Average sequence length: 257.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02450	D3TKS1_GLOMM_82_193	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02450	D2VVR6_NAEGR_97_374	100

Sequence based PCA Plot of the family - PF02450 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=84 Length=8
Motif2 Start=21 Length=18
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay