3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02449

Details:

PFam ID : PF02449

PFam Domain Description : Beta-galactosidase

Number of Sequence in 50% Dataset : 194

Number of Sequence in Full Dataset : 622

Average sequence length: 296.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02449	A7VXP8_9CLOT_1_49	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02449	D2QPL1_SPILD_95_248	99.8

Sequence based PCA Plot of the family - PF02449 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=48 Length=11
Motif2 Start=157 Length=8
Motif3 Start=3 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay