3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02447

Details:

PFam ID : PF02447

PFam Domain Description : GntP family permease

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 774

Average sequence length: 391.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02447	E2XY07_PSEFL_1_58	77.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02447	A6TKL0_ALKMQ_4_472	99.8

Sequence based PCA Plot of the family - PF02447 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8
Motif4 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay