3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02446

Details:

PFam ID : PF02446

PFam Domain Description : 4-alpha-glucanotransferase

Number of Sequence in 50% Dataset : 158

Number of Sequence in Full Dataset : 1004

Average sequence length: 466.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02446	C3QG69_9BACE_3_130	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02446	F0VJ72_NEOCA_15_601	100

Sequence based PCA Plot of the family - PF02446 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=17
Motif2 Start=52 Length=8
Motif3 Start=559 Length=8
Motif4 Start=268 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay