3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02445

Details:

PFam ID : PF02445

PFam Domain Description : Quinolinate synthetase A protein

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 835

Average sequence length: 306.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02445	B1B9T5_CLOBO_86_138	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02445	D4I913_ERWAE_1_81	100

Sequence based PCA Plot of the family - PF02445 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=27
Motif2 Start=61 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay