3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02444

Details:

PFam ID : PF02444

PFam Domain Description : Hepatitis E virus ORF-2 (Putative capsid protein)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 20

Average sequence length: 71.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02444	ORF3_HEVCT_1_112	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02444	ORF3_HEVCT_1_112	100

Sequence based PCA Plot of the family - PF02444 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=28 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay