3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02443

Details:

PFam ID : PF02443

PFam Domain Description : Circovirus capsid protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 56

Average sequence length: 175.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02443	Q6V993_BFDV_1_42	41.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02443	C6GII0_9VIRU_2_214	100

Sequence based PCA Plot of the family - PF02443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay