3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02440

Details:

PFam ID : PF02440

PFam Domain Description : Adenovirus E3 region protein CR1

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 43

Average sequence length: 58.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02440	Q2FAU6_9BETA_40_114	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02440	E1CIL2_ADE15_234_291	100

Sequence based PCA Plot of the family - PF02440 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay