3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02439

Details:

PFam ID : PF02439

PFam Domain Description : Adenovirus E3 region protein CR2

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 17

Average sequence length: 35.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02439	Q9YUQ7_9ADEN_61_652	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02439	Q91CB8_ADE08_357_395	100

Sequence based PCA Plot of the family - PF02439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay