3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02438

Details:

PFam ID : PF02438

PFam Domain Description : Late 100kD protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 31

Average sequence length: 570.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02438	Q9YUQ7_9ADEN_61_652	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02438	Q9YUQ7_9ADEN_61_652	100

Sequence based PCA Plot of the family - PF02438 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=161 Length=8
Motif2 Start=425 Length=8
Motif3 Start=324 Length=11
Motif4 Start=467 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay