3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02436

Details:

PFam ID : PF02436

PFam Domain Description : Conserved carboxylase domain

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 898

Average sequence length: 189.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02436	A3VWM4_9RHOB_294_446	21.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02436	F2NJF4_9DELT_304_472	99.8

Sequence based PCA Plot of the family - PF02436 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=107 Length=8
Motif2 Start=2 Length=8
Motif3 Start=15 Length=8
Motif4 Start=78 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay