3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02434

Details:

PFam ID : PF02434

PFam Domain Description : Fringe-like

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 459

Average sequence length: 170.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02434	F1QF40_DANRE_63_122	91.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02434	B0WI64_CULQU_60_202	100

Sequence based PCA Plot of the family - PF02434 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=18
Motif2 Start=240 Length=8
Motif3 Start=190 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay