3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02433

Details:

PFam ID : PF02433

PFam Domain Description : Cbb3-type cytochrome oxidase component FixQ

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 405

Average sequence length: 196.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02433	B4UJY2_ANASK_209_283	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02433	A8UG26_9FLAO_1_114	100

Sequence based PCA Plot of the family - PF02433 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=67 Length=8
Motif2 Start=2 Length=18
Motif3 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay