3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02431

Details:

PFam ID : PF02431

PFam Domain Description : Chalcone-flavanone isomerase

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 269

Average sequence length: 178.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02431	D8S0Y6_SELML_17_216	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02431	Q53B71_SOYBN_13_137	100

Sequence based PCA Plot of the family - PF02431 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=1 Length=8
Motif3 Start=16 Length=8
Motif4 Start=179 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay