3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02430

Details:

PFam ID : PF02430

PFam Domain Description : Apical membrane antigen 1

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 47

Average sequence length: 267.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02430	E3SUL7_PLAVI_1_168	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02430	Q4UHH9_THEAN_247_747	100

Sequence based PCA Plot of the family - PF02430 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay