3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02423

Details:

PFam ID : PF02423

PFam Domain Description : Ornithine cyclodeaminase/mu-crystallin family

Number of Sequence in 50% Dataset : 312

Number of Sequence in Full Dataset : 1196

Average sequence length: 292.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02423	B7DNE4_9BACL_112_248	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02423	A6F003_9ALTE_1_362	100

Sequence based PCA Plot of the family - PF02423 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=99 Length=8
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay