3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02421

Details:

PFam ID : PF02421

PFam Domain Description : Ferrous iron transport protein B

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 1276

Average sequence length: 186.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02421	Q4LEH3_9CREN_3_128	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02421	E1X3A2_BACMS_4_225	100

Sequence based PCA Plot of the family - PF02421 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=91 Length=8
Motif2 Start=32 Length=14
Motif3 Start=57 Length=11
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay