3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02420

Details:

PFam ID : PF02420

PFam Domain Description : Insect antifreeze protein repeat

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 143

Average sequence length: 11.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02420	B8Y2Z0_FESAR_2_32	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02420	Q5G6W9_9CUCU_49_60	75

Sequence based PCA Plot of the family - PF02420 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay