3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02417

Details:

PFam ID : PF02417

PFam Domain Description : Chromate transporter

Number of Sequence in 50% Dataset : 233

Number of Sequence in Full Dataset : 2006

Average sequence length: 172.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02417	D2W0R6_NAEGR_250_475	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02417	D2W0R6_NAEGR_250_475	99.9

Sequence based PCA Plot of the family - PF02417 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=25 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay