3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02416

Details:

PFam ID : PF02416

PFam Domain Description : mttA/Hcf106 family

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 1950

Average sequence length: 71.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02416	C2GIW8_9CORY_5_45	84.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02416	B0TGJ7_HELMI_4_169	100

Sequence based PCA Plot of the family - PF02416 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay