3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02415

Details:

PFam ID : PF02415

PFam Domain Description : Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat

Number of Sequence in 50% Dataset : 253

Number of Sequence in Full Dataset : 367

Average sequence length: 23.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02415	Q823X0_CHLCV_210_228	23.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02415	D3E1F4_METRM_288_306	72

Sequence based PCA Plot of the family - PF02415 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay