3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02414

Details:

PFam ID : PF02414

PFam Domain Description : Borrelia ORF-A

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 190

Average sequence length: 210.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02414	B8F1W3_BORGA_1_104	13.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02414	C0RQA3_9SPIO_21_350	94.1

Sequence based PCA Plot of the family - PF02414 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=284 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay