3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02413

Details:

PFam ID : PF02413

PFam Domain Description : Caudovirales tail fibre assembly protein

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 405

Average sequence length: 117.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02413	E0SM49_DICD3_3_90	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02413	C7BSP4_PHOAA_2_183	99.5

Sequence based PCA Plot of the family - PF02413 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=8
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay